Automate your ecommerce orders by connecting to hundreds of fulfillment and POD integrations! Order Desk is an order management app that lets merchants, artists, and suppliers automate their order fulfillment workflow using our Rule Builder and hundreds of integrated services including shopping carts and marketplaces, print on demand fulfillment partners, shipping companies, CRMs and more. Order Desk is an order management app that lets merchants, artists, and suppliers automate their order fulfillment workflow using our Rule Builder and hundreds of integrated services including shopping carts and marketplaces, print on demand fulfillment partners, shipping companies, CRMs and more. more Use the Rules Engine to automate your orders based on any set of criteria Connect to hundreds of integrations—shipping, fulfillment, print on demand, etc. Completely Customizable—There's something for every unique order workflow
Multi-store Shopify Apps
Discover the best Multi-store apps for your Shopify store in 2026. Compare features, pricing, and reviews to find the perfect solution.
Looking for the Top Multi-store Apps?
We've analyzed thousands of multi-store apps to identify the top performers based on ratings and install counts.
View Best Multi-store Apps
Scale Smarter: Automated Order Splitting & Routing with Multiple Suppliers, Real-Time Inventory Sync Are you a dropshipper, retailer or marketplace with existing supplier relationships? Boost efficiency, fulfill faster and eliminate manual work with automated order routing. Split & assign orders across multiple suppliers using advanced routing rules, reducing manual errors and optimizing reliability. Enhance customer satisfaction - stop overselling and cancelled orders with real-time supplier inventory sync. Easy to get started and scale with AI-guided setup. Add suppliers in clicks, not weeks. Are you a dropshipper, retailer or marketplace with existing supplier relationships? Boost efficiency, fulfill faster and eliminate manual work with automated order routing. Split & assign orders across multiple suppliers using advanced routing rules, reducing manual errors and optimizing reliability. Enhance customer satisfaction - stop overselling and cancelled orders with real-time supplier inventory sync. Easy to get started and scale with AI-guided setup. Add suppliers in clicks, not weeks. more Automatically split orders and send fulfillment requests to the correct supplier Easily manage order and fulfillment status with suppliers through our web portal Real-time product, order tracking, and inventory sync between Shopify stores Prepaid shipping labels simplify your workflow and control your shipping costs AI-guided setup for sending and receiving orders, supplier settings, and more
Automated Exchanges. Powerful Help Desk software. Unlimited Tickets, Agents & Automations. All-in-1. Outvio offers a powerful Exchanges and Returns management tool and a groundbreaking Help Desk platform for your Shopify store. Complete with a fully branded self-service portal for your customers, live chat and easy-to-use ticketing management for all contact channels. Outvio also allows you to efficiently automate your entire post-purchase workflow, encompassing order fulfilment, shipping, tracking, and customer communication. Truly everything you need, in one single easy-to-use platform. Outvio offers a powerful Exchanges and Returns management tool and a groundbreaking Help Desk platform for your Shopify store. Complete with a fully branded self-service portal for your customers, live chat and easy-to-use ticketing management for all contact channels. Outvio also allows you to efficiently automate your entire post-purchase workflow, encompassing order fulfilment, shipping, tracking, and customer communication. Truly everything you need, in one single easy-to-use platform. more Returns and Exchanges, Upselling with instant Checkout within the Returns Portal Refunds to Store Credit, Giftcards, built-in Pickup & Return Label generation HelpDesk and Ticketing software with Unlimited agents, tickets and automations Live-Chat. Single Inbox for Email, SMS, WhatsApp and Social Media conversations Smart Fulfilment & Shipping (130+ carriers), fully branded Delivery Tracking
Agents that ops and finance teams actually rely on. Parabola is the AI agent platform for ops and finance teams. You describe your messy, recurring processes (the work that lives in macros, Python scripts, and tribal knowledge today) like reconciliations, carrier billing audits, accruals, inventory checks, and PO matching. Parabola builds the agents that run them on schedule, handle the unstructured inputs (PDFs, screenshots, multi-tab spreadsheets) a human analyst would handle, and show their work at every step. Parabola is the AI agent platform for ops and finance teams. You describe your messy, recurring processes (the work that lives in macros, Python scripts, and tribal knowledge today) like reconciliations, carrier billing audits, accruals, inventory checks, and PO matching. Parabola builds the agents that run them on schedule, handle the unstructured inputs (PDFs, screenshots, multi-tab spreadsheets) a human analyst would handle, and show their work at every step. more Automate complex processes to save time, avoid errors, and alert your team Leverage AI to organize messy data across emails, PDFs, and spreadsheets Reconcile orders and inventory levels between Shopify and systems like NetSuite Set up custom alerts for unfulfilled Shopify orders or low inventory levels Combine Shopify data with data from other sources in your stack
All your data in one analytics platform. Export, report, analyze, and explore your data. Try it now. Connect all your sources of data together to understand how to grow your profit. Analyze multiple stores, marketing channels, and more like Amazon, Etsy and more. See how your Google Ads or Facebook Ads are performing on ROAS. Analyze your UPS labels or ShipStation costs. Connect your Stripe, Braintree, or PayPal accounts so you can analyze gateway fees and understand Gross Margin % or Profit. Get your Ecommerce Dashboard setup & working for your business! Connect all your sources of data together to understand how to grow your profit. Analyze multiple stores, marketing channels, and more like Amazon, Etsy and more. See how your Google Ads or Facebook Ads are performing on ROAS. Analyze your UPS labels or ShipStation costs. Connect your Stripe, Braintree, or PayPal accounts so you can analyze gateway fees and understand Gross Margin % or Profit. Get your Ecommerce Dashboard setup & working for your business! more Unlock your data and access mission critical information to grow your business. Export your date and integrate it with other mission critical services. Analyze your business, products, customers, and get your team on the same page. Share and export your reports to PDF, Excel, CSV, Google Sheets. Scheduled reports are automatically sent via email or to Google Sheets.
Warehouse software for e-commerce. Professional. Simple. Set it up yourself & start picking. Picqer helps you make the processes in your warehouse smarter and more efficient. With Picqer you work more calmly, walk less, eliminate unnecessary work and do things first time right. As a result, you process orders faster with the same team, without having to work harder. Picqer helps you make the processes in your warehouse smarter and more efficient. With Picqer you work more calmly, walk less, eliminate unnecessary work and do things first time right. As a result, you process orders faster with the same team, without having to work harder. more Stock & Location Management Picklists & Smart Picking Routes Purchasing & Receiving Inventory Shipment & Returns Reports & Automations
pimsimple provides product & media management functionality, unifying data from disperate sources. pimsimple is a cost-effective Product Information Management (PIM) system in the market, ideal for manufacturers, distributors, retailers, digital and marketing agencies. It uses state-of-the-art technology, yet is effortless and easy for users to get operational quickly. It's a PIM which has been made with the user in mind regardless of the size of your business. pimsimple is a cost-effective Product Information Management (PIM) system in the market, ideal for manufacturers, distributors, retailers, digital and marketing agencies. It uses state-of-the-art technology, yet is effortless and easy for users to get operational quickly. It's a PIM which has been made with the user in mind regardless of the size of your business. more Combine products from different sources, including files & direct integration. Import and manage media from cloud storage or existing URLs. Completely flexible data model which you control.
Order Management and Integrations for Mid-Market and Enterprise DTC, POS and B2B Sellers With Pipe17, Shopify brands can confidently sell on every channel—wholesale or retail—while keeping fulfillment costs down! Built to meet the demands of high performance sellers for more scale, reliability and automation in their B2B and DTC order operations. Flow orders, fulfillments, inventory, products, returns, payments, payment statuses, statements, customers, companies, locations, terms, catalogs, pricing, and deposits between Shopify and your marketplaces, fulfillment centers, and ERPs. With Pipe17, Shopify brands can confidently sell on every channel—wholesale or retail—while keeping fulfillment costs down! Built to meet the demands of high performance sellers for more scale, reliability and automation in their B2B and DTC order operations. Flow orders, fulfillments, inventory, products, returns, payments, payment statuses, statements, customers, companies, locations, terms, catalogs, pricing, and deposits between Shopify and your marketplaces, fulfillment centers, and ERPs. more Connect and Automate Complex B2B and DTC Flows Between Your Applications Hold, Split and Route B2B and DTC Orders Across Your Fulfillment Centers Post Updates to Your ERP and Data Warehouse in Realtime Automate Kit and Bundle Handling between Shopify and Your Fulfillment Centers Keep Inventory Levels in Sync between Shopify, your channels and your ERP
Play Or Draw Inventory Sync keeps your inventory current across both platforms Play Or Draw Inventory Sync allows merchants on the Play Or Draw platform to keep their inventory up to date and automatically synced across both platforms. Play Or Draw Inventory Sync allows merchants on the Play Or Draw platform to keep their inventory up to date and automatically synced across both platforms. more Minimal and easy setup Full inventory imports once onboarded Consistent and reliable syncing between both platforms
Track staff hours directly from your POS. Manage shifts, schedules, overtime, and exports. Track staff time and attendance in Shopify POS. Staff clock in and out with breaks on any POS device. In Shopify Admin, managers review timesheets, edit shifts, create schedules and generate payroll reports. Export CSV reports for payroll processing, labor cost tracking, and recordkeeping. Staff syncs from Shopify staff accounts after install. No third-party sites to sign into. Track staff time and attendance in Shopify POS. Staff clock in and out with breaks on any POS device. In Shopify Admin, managers review timesheets, edit shifts, create schedules and generate payroll reports. Export CSV reports for payroll processing, labor cost tracking, and recordkeeping. Staff syncs from Shopify staff accounts after install. No third-party sites to sign into. more Shopify POS employee time clock for clock-in/out and breaks Payroll-ready timesheets with shift edits and CSV exports in Shopify Admin Employee scheduling and shift planning Multi-location time tracking for retail teams No third-party login, ready after install, in-app chat support
AI Inventory Management & Planner. Inventory Transfers & Stock Forecast, Purchase Orders & Reports. AI inventory forecasting, demand planning and purchase order management. Inventory Transfers move stock across multiple stores and locations and replace Stocky: suppliers and purchase orders migrate automatically. Automated inventory and replenishment alerts to create purchase orders and avoid low stock or overstock. Track raw materials, manage Bill of Materials and export inventory reports. Stock Take & Barcode Label now live. ERP with multi store inventory management that syncs in real time. AI inventory forecasting, demand planning and purchase order management. Inventory Transfers move stock across multiple stores and locations and replace Stocky: suppliers and purchase orders migrate automatically. Automated inventory and replenishment alerts to create purchase orders and avoid low stock or overstock. Track raw materials, manage Bill of Materials and export inventory reports. Stock Take & Barcode Label now live. ERP with multi store inventory management that syncs in real time. more AI Demand Planning & Forecasting: Use AI to plan sales by product, SKU & season Inventory Planning: Reorder with smart alerts & dynamic buying table like ERP Purchase Order Management: Migrate from Stocky, create in bulk synced with WMS Raw Materials: Create bill of materials to track & forecast raw material needs Inventory Transfers: Multi Location inventory management, min/max stock top-ups
Know your real profit instantly. Automatic profit calculations, ad spend sync and powerful analytics Stop guessing your real profit. Profit Calc automatically calculates true profit using orders, product costs, shipping, taxes, and ad spend. Skip messy spreadsheets and get clear profit reports, dashboards, and analytics by order, product, or store. Track ROAS, AOV, refunds, transaction fees, expenses, and ad spend in one place. Sync Facebook, Google, TikTok, Snapchat, and more. Supports VAT, COD, global currencies, advanced COGS settings, and multi-store reporting. Includes full P&L reporting Stop guessing your real profit. Profit Calc automatically calculates true profit using orders, product costs, shipping, taxes, and ad spend. Skip messy spreadsheets and get clear profit reports, dashboards, and analytics by order, product, or store. Track ROAS, AOV, refunds, transaction fees, expenses, and ad spend in one place. Sync Facebook, Google, TikTok, Snapchat, and more. Supports VAT, COD, global currencies, advanced COGS settings, and multi-store reporting. Includes full P&L reporting more Instant true profit: auto COGS, fees, shipping, taxes & ad spend no spreadsheets All-in-one dashboards: profit, ROAS, AOV, refunds, chargebacks, VAT, fees + P&L. Syncs with Facebook, Google, Bing, TikTok, Snapchat, Klaviyo, and Pinterest ads. Aliexpress, Printful, Printify, CJ Dropship, ShipHero, ShipBob, Shippo, Gelato Multi-currency accuracy: real-time + historical FX rates for clean global profit
Real-time profit analytics: know your true net profit after COGS, fees and ad spend, every day. Profitario is the automated profit analytics platform, profit tracker and profit calculator for Shopify. Connect your store, ad accounts and payment providers and see your true profit in real time. No spreadsheets. Track net profit, gross profit and profit margin for every order, product and channel after COGS, shipping, expenses, fees, sales tax and ad spend, all in one live profit and loss (P&L) dashboard. Follow ROAS and customer lifetime value (LTV), and know if you made money today. Profitario is the automated profit analytics platform, profit tracker and profit calculator for Shopify. Connect your store, ad accounts and payment providers and see your true profit in real time. No spreadsheets. Track net profit, gross profit and profit margin for every order, product and channel after COGS, shipping, expenses, fees, sales tax and ad spend, all in one live profit and loss (P&L) dashboard. Follow ROAS and customer lifetime value (LTV), and know if you made money today. more Auto-Sync Profit: Imports orders, ad & payment data - zero spreadsheets Real-Time Net Profit: Live P&L profit dashboard after COGS, sales tax & ad spend True Profit per Product: Net profit, gross profit & margin for every order Marketing ROI: ROAS, POAS & channel-level marketing attribution on ad spend Value & Reports: Customer lifetime value (LTV), cohort analysis & custom report
Auto PayPal Tracking Sync to Build your trust with PayPal, Reduce Money on Hold & get Funds Faster. Proveway syncs PayPal tracking from Shopify on autopilot. Syncing PayPal Tracking enables PayPal algorithms to track successful deliveries. Which avoids unwanted disputes, money on hold & reserves. By syncing PayPal tracking with Proveway your business becomes transparent! Proveway provides massive ROI on your time and turns on PayPal Seller Protections for each transaction as soon it syncs tracking to your PayPal account. Proveway syncs PayPal tracking from Shopify on autopilot. Syncing PayPal Tracking enables PayPal algorithms to track successful deliveries. Which avoids unwanted disputes, money on hold & reserves. By syncing PayPal tracking with Proveway your business becomes transparent! Proveway provides massive ROI on your time and turns on PayPal Seller Protections for each transaction as soon it syncs tracking to your PayPal account. more Auto - Stripe & PayPal Tracking Sync to Avoid Being Prone to Random Holds! Past Order Sync - Process past 3 Month Orders in 1 Click. Digital Order PayPal Tracing Sync, Courier Mapping & PayPal Courier Match. Insight of orders shipments in 1 clicks across 900+ Couriers. Brand page tracking page so customers can track the status of their order.
Multichannel inventory & order management, B2B wholesale, and accounting sync—simplified with Qoblex Qoblex’s inventory management software gives you complete control over your supply chain, from inventory and order fulfillment to forecasting and manufacturing—all in one platform. Gain real-time insights and leverage inventory-based analytics to make data-driven decisions that drive growth. Plus, our robust B2B eCommerce Platform seamlessly integrates with your operations, making scaling easier than ever. Unlock your potential and experience the future of inventory management with Qoblex! Qoblex’s inventory management software gives you complete control over your supply chain, from inventory and order fulfillment to forecasting and manufacturing—all in one platform. Gain real-time insights and leverage inventory-based analytics to make data-driven decisions that drive growth. Plus, our robust B2B eCommerce Platform seamlessly integrates with your operations, making scaling easier than ever. Unlock your potential and experience the future of inventory management with Qoblex! more Link and manage multiple sales channels & warehouses under one dashboard. Full traceability with serial number, batch/lot number & expiry date tracking. Fulfill retail and wholesale orders in different currencies, prices, and terms. Workflow automation to streamline your procurement and manufacturing processes. Integrations with Xero, QuickBooks Online, and more!
Automated Sales Sync to QuickBooks Online & Intuit Enterprise Suite – Individual Order or Summary Simplify your Shopify accounting and reconciliation with a flexible sync solution designed for your business. Individual Order Sync lets you export Orders, Products, Customers, Taxes, and other order details to QuickBooks Online or Intuit Enterprise Suite, either automatically or manually at your convenience. Summary Sync provides an easier way to reconcile payments by creating one entry for each Shopify payout and one daily entry for other payment methods. Simplify your Shopify accounting and reconciliation with a flexible sync solution designed for your business. Individual Order Sync lets you export Orders, Products, Customers, Taxes, and other order details to QuickBooks Online or Intuit Enterprise Suite, either automatically or manually at your convenience. Summary Sync provides an easier way to reconcile payments by creating one entry for each Shopify payout and one daily entry for other payment methods. more Sync Shopify sales data to QuickBooks Online and Intuit Enterprise Suite Individual Order Sync with Customers, Products, Taxes, and order details Summary Sync for easier payment and payout reconciliation Automated or manual sync options Easy reconciliation of Shopify sales and payments
Sync sales to QuickBooks Desktop in an automated manner - Sync individual orders Sync sales data to QuickBooks Desktop or Enterprise editions easily in an automated manner - Sync Individual orders With Individual Orders you can export all your Orders, Products & Customer data to QuickBooks Automatically. You can sync data to QuickBooks automatically or prefer to do it manually at your convenience. Summary Sync: With Summary Sync our app will create one entry for each Payout from Shopify and one entry per day for each of the other payment methods. Sync sales data to QuickBooks Desktop or Enterprise editions easily in an automated manner - Sync Individual orders With Individual Orders you can export all your Orders, Products & Customer data to QuickBooks Automatically. You can sync data to QuickBooks automatically or prefer to do it manually at your convenience. Summary Sync: With Summary Sync our app will create one entry for each Payout from Shopify and one entry per day for each of the other payment methods. more Individual Order Sync - Includes Customer, Products, Taxes and All details Automated Sync Process Very Easy Reconciliation Summary Invoice Sync - Sync Daily Summary or Settlement Summary
Imports your orders, POS, refunds, customers, payment fees and products seamlessly into QuickBooks Connect Shopify to QuickBooks Online and keep your accounts up to date automatically. Import orders as invoices, create or match customers and items, apply payments, handle refunds/credit notes, transaction fees, discounts and worldwide tax including US/Canada sales tax, GST and VAT. Supports multiple Shopify stores, multi-currency and configurable mapping. Connect Shopify to QuickBooks Online and keep your accounts up to date automatically. Import orders as invoices, create or match customers and items, apply payments, handle refunds/credit notes, transaction fees, discounts and worldwide tax including US/Canada sales tax, GST and VAT. Supports multiple Shopify stores, multi-currency and configurable mapping. more Import orders, POS sales and sales from other channels as QuickBooks Invoices Import payments and payment transaction fees Import refunds/returns as QuickBooks Credit Notes Multi-currency support Compatible with QuickBooks Tax Automation for US businesses
Sync products, orders and payouts into QuickBooks Online to record sales, fees and update inventory. Seamlessly connect your Shopify store to QuickBooks. Know where your money is going. See trends at a glance to help you grow. Seamlessly connect your Shopify store to QuickBooks. Know where your money is going. See trends at a glance to help you grow. more Connect your e-commerce platforms and marketplaces with a quick and easy setup. Track cost of goods and expenses with reports to understand your profitability Payouts are automatically accounted for, giving you peace of mind. Stay on top of cash flow, and understand your revenue to grow your business
Accurate accounting for retail and B2B sales, payments, and product details. QuickBooks provides accounting software for Shopify retail and B2B merchants that brings sales activity, payments, customers, and product details into one centralized place for smoother bookkeeping and easier oversight. Categories are mapped for you to reduce manual entry and help keep your books accurate as you sell and your shop evolves. Connect your store at no extra cost — the connector is included with your QuickBooks subscription. QuickBooks provides accounting software for Shopify retail and B2B merchants that brings sales activity, payments, customers, and product details into one centralized place for smoother bookkeeping and easier oversight. Categories are mapped for you to reduce manual entry and help keep your books accurate as you sell and your shop evolves. Connect your store at no extra cost — the connector is included with your QuickBooks subscription. more Save time with sales, taxes, and fees mapped to the right categories Record B2B orders as invoices, with customer and product details aligned Track inventory smarter with quantities and costs kept in sync as you sell Stay on top of cash flow across retail and B2B sales and other channels
Related Categories
About Multi-store Apps for Shopify
Multi-store apps are essential tools for Shopify merchants looking to enhance their store's functionality and improve customer experience. These specialized applications help store owners streamline operations, increase sales, and provide better service to their customers.
When choosing a multi-store app for your Shopify store, consider factors such as features, pricing, customer support, and compatibility with your theme and other apps. Reading reviews from other merchants can also provide valuable insights into the app's performance and reliability.
The apps listed on this page represent some of the best multi-store solutions available in the Shopify App Store. Each has been selected based on its functionality, user ratings, and overall value for Shopify merchants.